Levels: Primary, Middle, High, Other
| Name | Level |
|---|---|
| Bluffview Montessori | Elementary |
| Goodview Elementary | Elementary |
| Jefferson Elementary | Elementary |
| Lewiston-Altura Elementary | Elementary |
| Lewiston-Altura Intermediate El. | Middle |
| Lewiston-Altura Secondary | High |
| Madison Elementary | Not reported |
| Ridgeway Community School | Elementary |
| Riverway Learning Community Charter | Elementary |
| Riverway Secondary | High |
| Rollingstone Community Elementary | Not reported |
| St. Charles Elementary | Elementary |
| St. Charles Secondary | High |
| Washington-Kosciusko Elementary | Elementary |
| Winona Middle | Middle |
| Winona Senior High | High |
| Name | Level |
|---|---|
| Hved Ecse | Prekindergarten |
| Winona Early Childhood Special Ed. | Prekindergarten |
| Name | Level |
|---|---|
| Winona Area Learning Center | High |
Levels: Primary, Middle, High, Other
Levels: Elementary School, Secondary School, Other - mixed grades
| Name | Level |
|---|---|
| Cotter Schools | Mixed Grades |
| Immanuel Lutheran School | Elementary |
| St. John's Evangelical Lutheran School | Elementary |
| St. Johns Lutheran School | Elementary |
| St. Martin S Lutheran School | Elementary |
| St. Matthews Lutheran School | Elementary |
| Winona Area Catholic Schools | Elementary |
| Name | Level |
|---|---|
| St. Mary's Primary School | Elementary |
Levels: Elementary School, Secondary School, Other - mixed grades
